AneuFinder-package: Copy-number detection in WGSCS and Strand-Seq data
In AneuFinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Description
CNV detection in whole-genome single cell sequencing (WGSCS) and Strand-seq data using a Hidden Markov Model. The package implements CNV detection, commonly used plotting functions, export to BED format for upload to genome browsers, and measures for assessment of karyotype heterogeneity and quality metrics.
Details
The main function of this package is Aneufinder and produces several plots and browser files. If you want to have more fine-grained control over the different steps (binning, GC-correction, HMM, plotting) check the vignette Introduction to AneuFinder.
Author(s)
Aaron Taudt, David Porubsky
AneuFinder documentation built on Nov. 8, 2020, 7:44 p.m.
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Description
CNV detection in whole-genome single cell sequencing (WGSCS) and Strand-seq data using a Hidden Markov Model. The package implements CNV detection, commonly used plotting functions, export to BED format for upload to genome browsers, and measures for assessment of karyotype heterogeneity and quality metrics.
Details
The main function of this package is Aneufinder and produces several plots and browser files. If you want to have more fine-grained control over the different steps (binning, GC-correction, HMM, plotting) check the vignette Introduction to AneuFinder.
Author(s)
Aaron Taudt, David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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