compareMethods: Compare copy number calling methods
In AneuFinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Description Usage Arguments Value Author(s) Examples

Compare two sets of aneuHMM objects generated by different methods (see option method of findCNVs).

1	compareMethods(models1, models2)

`models1`	A list of `aneuHMM` objects or a character vector with files that contain such objects.
`models2`	A list of `aneuHMM` objects or a character vector with files that contain such objects. IDs of the models must match the ones in `models1`.

A data.frame with one column 'concordance' which gives the fraction of the genome that is called concordantly between both models.

Aaron Taudt

## Get a list of HMMs
folder <- system.file("extdata", "primary-lung", "hmms", package="AneuFinderData")
files <- list.files(folder, full.names=TRUE)
## Compare the models with themselves (non-sensical)
df <- compareMethods(files, files)
head(df)