biDNAcopy.findCNVs: Find copy number variations (DNAcopy, bivariate)
In AneuFinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Description
Usage
Arguments
Value
Description
biDNAcopy.findCNVs classifies the binned read counts into several states which represent copy-number-variation using read count information from both strands.
Usage
1
biDNAcopy.findCNVs(binned.data, ID = NULL, CNgrid.start = 0.5)
Arguments
binned.data
A GRanges-class object with binned read counts.
ID
An identifier that will be used to identify this sample in various downstream functions. Could be the file name of the binned.data for example.
CNgrid.start
Start parameter for the CNgrid variable. Very empiric. Set to 1.5 for normal data and 0.5 for Strand-seq data.
Value
An aneuHMM object.
AneuFinder documentation built on Nov. 8, 2020, 7:44 p.m.
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Description Usage Arguments Value
Description
biDNAcopy.findCNVs classifies the binned read counts into several states which represent copy-number-variation using read count information from both strands.
Usage
1 | biDNAcopy.findCNVs(binned.data, ID = NULL, CNgrid.start = 0.5)
|
Arguments
binned.data |
A GRanges-class object with binned read counts. |
ID |
An identifier that will be used to identify this sample in various downstream functions. Could be the file name of the |
CNgrid.start |
Start parameter for the CNgrid variable. Very empiric. Set to 1.5 for normal data and 0.5 for Strand-seq data. |
Value
An aneuHMM object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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