plot.aneuBiHMM: Plotting function for 'aneuBiHMM' objects

Description Usage Arguments Value

View source: R/plotting.R

Description

Make different types of plots for aneuBiHMM objects.

Usage

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## S3 method for class 'aneuBiHMM'
plot(x, type = "profile", ...)

Arguments

x

An aneuBiHMM object.

type

Type of the plot, one of c('profile', 'histogram', 'karyogram'). You can also specify the type with an integer number.

profile

An profile with read counts and CNV-state.

histogram

A histogram of binned read counts with fitted mixture distribution.

karyogram

A karyogram-like chromosome overview with CNV-state.

...

Additional arguments for the different plot types.

Value

A ggplot object.


AneuFinder documentation built on Nov. 8, 2020, 7:44 p.m.