API for BANDITS
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
| Global functions | |
|---|---|
| BANDITS | Man page |
| BANDITS-package | Man page |
| BANDITS_data | Man page |
| BANDITS_data-class | Man page |
| BANDITS_test | Man page |
| BANDITS_test-class | Man page |
| MCMC_chain_FULL | Source code |
| MCMC_chain_MultiGroup | Source code |
| MCMC_chain_MultiGroup_Together | Source code |
| MCMC_chain_Together_FULL | Source code |
| MCMC_infer_only | Source code |
| MCMC_infer_only_Together | Source code |
| Rcpp_FULL_Together_Multigroup | Source code |
| Rcpp_FULL_Unique_Multigroup | Source code |
| Rcpp_Together | Source code |
| Rcpp_Unique | Source code |
| char_in_char | Source code |
| compute_proportions | Source code |
| compute_pval_FULL | Source code |
| convergence | Man page |
| convergence,BANDITS_test-method | Man page |
| create_data | Man page Source code |
| create_pi_new | Source code |
| eff_len_compute | Man page Source code |
| filter_genes | Man page Source code |
| filter_tr_proportions_OneN | Source code |
| filter_transcripts | Man page Source code |
| find.mode | Source code |
| gene | Man page |
| gene,BANDITS_test-method | Man page |
| gene_tr_id | Man page |
| infer_one_group | Source code |
| infer_only | Source code |
| infer_only_Together | Source code |
| input_data | Man page |
| kallisto_read_eq_classes | Source code |
| kallisto_read_eq_classes_filteringTranscripts | Source code |
| load_kallisto_data | Source code |
| load_salmon_data | Source code |
| my_heidel.diag | Source code |
| my_pcramer | Source code |
| my_spectrum0.ar | Source code |
| plot_precision | Man page Source code |
| plot_proportions | Man page |
| plot_proportions,BANDITS_test-method | Man page |
| precision | Man page |
| prior_precision | Man page Source code |
| pval_compute_MultiGroup | Source code |
| pval_compute_Together_FULL | Source code |
| pval_compute_Together_MultiGroup | Source code |
| res_compute_infer_only | Source code |
| res_compute_infer_only_Together | Source code |
| results | Man page |
| salmon_read_eq_classes | Source code |
| salmon_read_eq_classes_filteringTranscripts | Source code |
| show,BANDITS_data-method | Man page |
| show,BANDITS_test-method | Man page |
| test_DTU | Man page Source code |
| test_DTU_multi_group | Source code |
| top_genes | Man page |
| top_genes,BANDITS_test-method | Man page |
| top_transcripts | Man page |
| top_transcripts,BANDITS_test-method | Man page |
| transcript | Man page |
| transcript,BANDITS_test-method | Man page |
| wald_DTU_test_FULL | Source code |
| wald_DTU_test_MultiGroup | Source code |
| wald_DTU_test_MultiGroup_Together | Source code |
| wald_DTU_test_Together_FULL | Source code |
