dot-compute_interspot_distances: Estimate the distance between two neighboring spots
In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
Description
Usage
Arguments
Value
Description
Fit linear models between each image pixel coordinate and its corresponding
array coordinate to estimate the pixel distance between two spots along
each axis. Add these distances to estimate the L1 distance between two
spots, then add a small buffer.
Usage
1
.compute_interspot_distances(sce, scale.factor = 1.02)
Arguments
sce
SingleCellExperiment (must include row, col, imagerow, imagecol
in colData)
scale.factor
Scale estimated L1 difference up by this amount.
Value
doubles xdist, ydist, radius
BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.
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Description Usage Arguments Value
Description
Fit linear models between each image pixel coordinate and its corresponding array coordinate to estimate the pixel distance between two spots along each axis. Add these distances to estimate the L1 distance between two spots, then add a small buffer.
Usage
1 | .compute_interspot_distances(sce, scale.factor = 1.02)
|
Arguments
sce |
SingleCellExperiment (must include row, col, imagerow, imagecol in colData) |
scale.factor |
Scale estimated L1 difference up by this amount. |
Value
doubles xdist, ydist, radius
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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