find_neighbors: Compute pairwise distances between all spots and return list...

In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Description

Compute pairwise distances between all spots and return list of neighbors for each spot.

Usage

find_neighbors(positions, radius, method = c("manhattan", "euclidean"))

Arguments

positions	(n x 2) matrix of spot coordinates.
radius	The maximum distance for two spots to be considered neighbors.
method	Distance metric to use.

Value

List df_j, where df_j[[i]] is a vector of zero-indexed neighbors of i.

BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.