getRDS: Download a processed sample from our S3 bucket

In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Description

Datasets are cached locally using BiocFileCache. The first time using this function, you may need to consent to creating a BiocFileCache directory if one does not already exist.

Usage

getRDS(dataset, sample, cache = TRUE)

Arguments

dataset	Dataset identifier
sample	Sample identifier
cache	If true, cache the dataset locally with BiocFileCache. Otherwise, download directly from our S3 bucket. Caching saves time on subsequent loads, but consumes disk space.

Value

sce A SingleCellExperiment with positional information in colData and PCs based on the top 2000 HVGs

Examples

sce <- getRDS("2018_thrane_melanoma", "ST_mel1_rep2", cache=FALSE)

BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.