Files in BayesSpace

Clustering and Resolution Enhancement of Spatial Transcriptomes

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

src/Makevars.win

src/cluster.cpp

src/RcppExports.cpp

src/Makevars

R/enhanceFeatures.R R/readVisium.R R/RcppExports.R R/utils.R R/BayesSpace.R R/qTune.R R/mcmcChain.R R/spatialCluster.R R/spatialPlot.R R/spatialPreprocess.R R/spatialEnhance.R vignettes/BayesSpace.Rmd man/qTune.Rd man/dot-make_subspot_coldata.Rd man/dot-select_subspot_positions.Rd man/dot-make_spot_vertices.Rd man/dot-init_cluster.Rd man/dot-make_vertices.Rd man/spatialPlot.Rd man/dot-clean_chain.Rd man/dot-prepare_inputs.Rd man/mcmcChain.Rd man/exampleSCE.Rd man/Mode.Rd man/dot-flatten_matrix_list.Rd man/dot-select_spot_positions.Rd man/featurePlot.Rd man/dot-read_chain.Rd man/find_neighbors.Rd man/readVisium.Rd man/getRDS.Rd man/clusterPlot.Rd man/dot-adjust_hex_centers.Rd man/cluster.Rd man/BayesSpace.Rd man/dot-infer_param_dims.Rd man/dot-make_square_spots.Rd man/spatialCluster.Rd man/dot-make_hex_spots.Rd man/deconvolve.Rd man/dot-make_subspot_offsets.Rd man/dot-compute_interspot_distances.Rd man/spatialEnhance.Rd man/spatialPreprocess.Rd man/dot-make_index_names.Rd man/dot-make_triangle_subspots.Rd man/dot-bsData.Rd man/enhanceFeatures.Rd man/dot-find_neighbors.Rd tests/testthat.R tests/testthat/test-enhanceFeatures.R tests/testthat/test-mcmcChain.R tests/testthat/test-find_neighbors.R

inst/CITATION

inst/doc/BayesSpace.html

inst/doc/BayesSpace.Rmd inst/doc/BayesSpace.R

inst/logo/BayesSpace_logo_alt.png

inst/logo/logo.png

inst/logo/hex_sticker.Rmd inst/extdata/README.md

inst/extdata/2018_thrane_melanoma/ST_mel1_rep2.Giotto_HMRF.csv

inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_HVGs.csv

inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_markers.csv

inst/extdata/2020_maynard_prefrontal-cortex/151673.Giotto_HMRF.csv

inst/testdata/maynard_151673_subset.PCs.csv.gz

inst/testdata/maynard_151673_subset.colData.csv.gz

inst/testdata/maynard_151673_subset.enhance_truth.csv.gz

inst/testdata/maynard_151673_subset.metadata.rds

BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.