exampleSCE: Create minimal 'SingleCellExperiment' for documentation...
In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
Description
Usage
Arguments
Details
Value
Examples
Description
Create minimal SingleCellExperiment for documentation examples.
Usage
1
exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)
Arguments
nrow
Number of rows of spots
ncol
Number of columns of spots
n_genes
Number of genes to simulate
n_PCs
Number of principal components to include
Details
Inspired by scuttle's mockSCE().
Value
A SingleCellExperiment object with simulated counts, corresponding
logcounts and PCs, and positional data in colData. Spots are
distributed over an (nrow x ncol) rectangle.
Examples
1
2
set.seed(149)
sce <- exampleSCE()
BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.
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Description Usage Arguments Details Value Examples
Description
Create minimal SingleCellExperiment for documentation examples.
Usage
1 | exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)
|
Arguments
nrow |
Number of rows of spots |
ncol |
Number of columns of spots |
n_genes |
Number of genes to simulate |
n_PCs |
Number of principal components to include |
Details
Inspired by scuttle's mockSCE().
Value
A SingleCellExperiment object with simulated counts, corresponding
logcounts and PCs, and positional data in colData. Spots are
distributed over an (nrow x ncol) rectangle.
Examples
1 2 | set.seed(149)
sce <- exampleSCE()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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