BayesSpace
Clustering and Resolution Enhancement of Spatial Transcriptomes

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dot-prepare_inputs: Prepare cluster/deconvolve inputs from SingleCellExperiment...

dot-prepare_inputs: Prepare cluster/deconvolve inputs from SingleCellExperiment...
In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Description Usage Value

Description

Prepare cluster/deconvolve inputs from SingleCellExperiment object

Usage

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.prepare_inputs(
  sce,
  use.dimred = "PCA",
  d = 15,
  positions = NULL,
  position.cols = c("imagecol", "imagerow"),
  radius = NULL,
  xdist = NULL,
  ydist = NULL
)

Value

List of PCs, names of columns with x/y positions, and inter-spot distances


BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.

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