deconvolve: Wrapper around C++ 'iterate_deconv()' function

In BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Description

Wrapper around C++ iterate_deconv() function

Usage

deconvolve(
  Y,
  positions,
  xdist,
  ydist,
  q,
  init,
  nrep = 1000,
  model = "normal",
  platform = c("Visium", "ST"),
  verbose = TRUE,
  jitter_scale = 5,
  jitter_prior = 0.01,
  mu0 = colMeans(Y),
  gamma = 2,
  lambda0 = diag(0.01, nrow = ncol(Y)),
  alpha = 1,
  beta = 0.01
)

Value

List of enhancement parameter values at each iteration

BayesSpace documentation built on Nov. 8, 2020, 8:03 p.m.