merge_transcriptome_and_intergenic: Merge transcriptome file provided by the user with the Bgee...
In BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Description Usage Arguments Value Author(s) Examples

This function will create a file corresponding to the concatenation of the transcriptome fasta file provided by the user and the corresponding intergenic fasta file created by Bgee.

merge_transcriptome_and_intergenic(
  myKallistoMetadata,
  myBgeeMetadata,
  myUserMetadata
)

`myKallistoMetadata`	A Reference Class KallistoMetadata object.
`myBgeeMetadata`	A Reference Class BgeeMetadata object.
`myUserMetadata`	A Reference Class UserMetadata object.

save merged file on the hard drive

Julien Wollbrett.

{
bgee <- new('BgeeMetadata', intergenic_release = '0.1')
user <- new ('UserMetadata', species_id = '6239')
kallisto <- new('KallistoMetadata')
user <- setTranscriptomeFromFile(user, system.file("extdata", 
"transcriptome.fa", package = "BgeeCall"), 'WBcel235')
merge_transcriptome_and_intergenic(kallisto, bgee, user)
}