setAnnotationFromFile: Set annotation_object of one UserMetadata object
In BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Description Usage Arguments Details Value Examples

Method of the class UserMetadata. Set annotation_object of one UserMetadata object by providing the path to a fasta transcriptome file.

setAnnotationFromFile(userObject, annotationPath, annotationName)

## S4 method for signature 'UserMetadata,character,missing'
setAnnotationFromFile(userObject, annotationPath, annotationName)

## S4 method for signature 'UserMetadata,character,character'
setAnnotationFromFile(userObject, annotationPath, annotationName)

`userObject`	The UserMetadata object
`annotationPath`	Absolute path to the annotation file
`annotationName`	(optional) Name of the annotation. Will be used to create folders.

If no annotationName is provided the name of the annotation file will be used to create folders.

An object of the class UserMetadata

{
# path to gtf annotation file
annotation_file <- system.file("extdata", "annotation.gtf", package = "BgeeCall")
user <- new("UserMetadata")
user <- setAnnotationFromFile(user, annotation_file,
                             "annotation_name")
}