setTranscriptomeFromFile: Set transcriptome_object of one UserMetadata object
In BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Description Usage Arguments Details Value Examples

Method of the class UserMetadata. Set transcriptome_object of one UserMetadata object by providing the path to a fasta transcriptome file.

setTranscriptomeFromFile(userObject, transcriptomePath, transcriptomeName)

## S4 method for signature 'UserMetadata,character,missing'
setTranscriptomeFromFile(userObject, transcriptomePath, transcriptomeName)

## S4 method for signature 'UserMetadata,character,character'
setTranscriptomeFromFile(userObject, transcriptomePath, transcriptomeName)

`userObject`	The UserMetadata object
`transcriptomePath`	Absolute path to the transcriptome file
`transcriptomeName`	(optional) Name of the trancriptome. Will be used to create folders.

If no transcriptomeName is provided the name of the transcriptome file will be used to create folders.

An object of the class UserMetadata

{
transcriptome_path <- system.file("extdata", "transcriptome.fa", package = "BgeeCall")
user <- new("UserMetadata")
user <- setTranscriptomeFromFile(user, transcriptome_path,
                                 "transcriptome_name")
}