setAnnotationFromObject: Set annotation_object of one UserMetadata object
In BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Description Usage Arguments Details Value Examples

Method of the class UserMetadata. Set annotation_object of one UserMetadata object by using one GRanges object as input.

setAnnotationFromObject(userObject, annotationObject, annotationName)

## S4 method for signature 'UserMetadata,GRanges,character'
setAnnotationFromObject(userObject, annotationObject, annotationName = "")

`userObject`	The UserMetadata object
`annotationObject`	object of thr GRanges S4 class
`annotationName`	(optional) Name of the annotation. Will be used to create folders.

If no annotationName is provided the name of the file is used to create folders.

An object of the class UserMetadata

{
user <- new("UserMetadata")
annotation_object <- rtracklayer::import(system.file("extdata",
"annotation.gtf", package = "BgeeCall"))
user <- setAnnotationFromObject(user, annotation_object,
                                 "annotation_name")
}