setTranscriptomeFromObject: Set transcriptome_object of one UserMetadata object
In BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Description Usage Arguments Details Value Examples

Method of the class UserMetadata. Set transcriptome_object of one UserMetadata object by using one DNAStringSet object as input.

setTranscriptomeFromObject(userObject, transcriptomeObject, transcriptomeName)

## S4 method for signature 'UserMetadata,DNAStringSet,character'
setTranscriptomeFromObject(userObject, transcriptomeObject, transcriptomeName)

`userObject`	UserMetadata object
`transcriptomeObject`	Object of the DNAStringSet S4 class
`transcriptomeName`	Name of the transcriptome. Will be used to create transcriptome folders.

Please use a DNAStringSet object as input. This class is defined in the Biostrings package

an object of UserMetadata

{
user <- new("UserMetadata")
transcriptome_object <- Biostrings::readDNAStringSet(
    system.file("extdata", "transcriptome.fa", package = "BgeeCall"))
user <- setTranscriptomeFromObject(user,
                 transcriptome_object,
                 "transcriptome_name")
}