cirPlot4pathway: Circular plot for a set of pathways
In BioMM: BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Description
Usage
Arguments
Details
Value
See Also
Description
The individual CpGs or genes within a given set of pathways are
displayed as the dots in the resulting plot. The significance of the CpGs or genes
are illustrated by the negative log P value.
Usage
1
cirPlot4pathway(datalist, topPathID, core = MulticoreParam(), fileName = NULL)
Arguments
datalist
The input data list containing ordered
collections of matrices.
topPathID
A predefined pathway IDs.
core
The number of cores used for computation. (Default: 10)
fileName
Add a character to the output file name.
(Default: 'Circular-Manhattan.pval.jpeg')
Details
Top 10 or 20 pathways are usually suggested to be visualized.
The significant features (if any) are highlighted using filled diamond.
The significance line is set as 0.05 marked as dashed red line.
Value
An output image file.
See Also
BioMM documentation built on Nov. 8, 2020, 11:04 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also
Description
The individual CpGs or genes within a given set of pathways are displayed as the dots in the resulting plot. The significance of the CpGs or genes are illustrated by the negative log P value.
Usage
1 | cirPlot4pathway(datalist, topPathID, core = MulticoreParam(), fileName = NULL)
|
Arguments
datalist |
The input data list containing ordered collections of matrices. |
topPathID |
A predefined pathway IDs. |
core |
The number of cores used for computation. (Default: 10) |
fileName |
Add a character to the output file name. (Default: 'Circular-Manhattan.pval.jpeg') |
Details
Top 10 or 20 pathways are usually suggested to be visualized. The significant features (if any) are highlighted using filled diamond. The significance line is set as 0.05 marked as dashed red line.
Value
An output image file.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.