utilsDeStrand: Utility: Split Genomic Ranges by strand

In CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Description

Utility function that attemps to split genomic ranges by strand with split(object, strand(object))

Usage

utilsDeStrand(object)

Arguments

object

Any object with a split and strand method, e.g. GRanges/GPos

Value

Object split by strand, e.g. GRangesList.

See Also

Other Utility functions: utilsAggregateRows(), utilsScoreOverlaps(), utilsSimplifyTxDb()

Examples

gp <- GPos(seqnames=Rle(c("chr1", "chr2", "chr1"), c(10, 6, 4)),
            pos=c(44:53, 5:10, 2:5),
            strand=c(rep("+", 10), rep("-", 10)))
gr <- as(gp, "GRanges")
utilsDeStrand(gp)
utilsDeStrand(gr)

CAGEfightR documentation built on Nov. 8, 2020, 5:42 p.m.