API for CEMiTool
Co-expression Modules identification Tool

Global functions
CEMiTool-class	Man page
adj_data	Man page
adj_data,CEMiTool-method	Man page
adj_data<-	Man page
adj_data<-,CEMiTool-method	Man page
cem	Man page
cemitool	Man page Source code
diagnostic_report	Man page
diagnostic_report,CEMiTool-method	Man page
expr0	Man page
expr_data	Man page
expr_data,CEMiTool-method	Man page
expr_data<-	Man page
expr_data<-,CEMiTool-method	Man page
expr_pct_filter	Man page Source code
filter_genes	Man page Source code
find_modules	Man page
find_modules,CEMiTool-method	Man page
fit_data	Man page
fit_data,CEMiTool-method	Man page
flip_vector	Source code
generate_report	Man page
generate_report,CEMiTool-method	Man page
get_adj	Man page
get_adj,CEMiTool-method	Man page
get_args	Source code
get_beta_data	Man page
get_beta_data,CEMiTool-method	Man page
get_cemitool_r2_beta	Man page
get_cemitool_r2_beta,CEMiTool-method	Man page
get_connectivity	Man page
get_connectivity,CEMiTool-method	Man page
get_forced_beta	Source code
get_hubs	Man page
get_hubs,CEMiTool-method	Man page
get_merged_mods	Man page
get_merged_mods,CEMiTool-method	Man page
get_mods	Man page
get_mods,CEMiTool-method	Man page
get_phi	Man page
get_phi,CEMiTool-method	Man page
gsea_data	Man page
gsea_data,CEMiTool-method	Man page
interactions_data	Man page
interactions_data,CEMiTool-method	Man page
interactions_data<-	Man page
interactions_data<-,CEMiTool-method	Man page
mod_colors	Man page
mod_colors,CEMiTool-method	Man page
mod_colors<-	Man page
mod_colors<-,CEMiTool,character-method	Man page
mod_gene_num	Man page
mod_gene_num,CEMiTool-method	Man page
mod_gsea	Man page
mod_gsea,CEMiTool-method	Man page
mod_names	Man page
mod_names,CEMiTool-method	Man page
mod_ora	Man page
mod_ora,CEMiTool-method	Man page
mod_summary	Man page
mod_summary,CEMiTool-method	Man page
module_genes	Man page
module_genes,CEMiTool-method	Man page
module_to_gmt	Man page Source code
new_cem	Man page Source code
nmodules	Man page
nmodules,CEMiTool-method	Man page
ora	Source code
ora_data	Man page
ora_data,CEMiTool-method	Man page
plot_beta_r2	Man page
plot_beta_r2,CEMiTool-method	Man page
plot_gsea	Man page
plot_gsea,CEMiTool-method	Man page
plot_hist	Man page
plot_hist,CEMiTool-method	Man page
plot_interaction	Source code
plot_interactions	Man page
plot_interactions,CEMiTool-method	Man page
plot_mean_k	Man page
plot_mean_k,CEMiTool-method	Man page
plot_mean_var	Man page
plot_mean_var,CEMiTool-method	Man page
plot_ora	Man page
plot_ora,CEMiTool-method	Man page
plot_ora_single	Man page Source code
plot_profile	Man page
plot_profile,CEMiTool-method	Man page
plot_qq	Man page
plot_qq,CEMiTool-method	Man page
plot_sample_tree	Man page
plot_sample_tree,CEMiTool-method	Man page
read_gmt	Man page Source code
sample_annot	Man page
sample_annotation	Man page
sample_annotation,CEMiTool-method	Man page
sample_annotation<-	Man page
sample_annotation<-,CEMiTool-method	Man page
save_plots	Man page
save_plots,CEMiTool-method	Man page
select_genes	Man page Source code
show,CEMiTool-method	Man page
show_plot	Man page
show_plot,CEMiTool-method	Man page
vst	Man page Source code
write_files	Man page
write_files,CEMiTool-method	Man page