golub: ALL/AML dataset of Golub et al. (1999)

In CMA: Synthesis of microarray-based classification

Description

s. below

Usage

data(golub)

Format

A data frame with 38 observations and 3052 variables. The first column (named golub.cl) contains the tumor classes (ALL = acute lymphatic leukaemia, AML = acute myeloid leukaemia).\ golub.cl: a factor with levels ALL AML.\ X2-X3051: Gene expression values.

Source

Adopted from the dataset in the package multtest.

References

Golub, T., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P.,

Coller, H., Loh, M. L., Downing, J., Caligiuri, M. A., Bloomfeld, C. D., Lander, E. S. (1999).

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Science 286, 531-537.

Examples

data(golub)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

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    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

CMA documentation built on Nov. 8, 2020, 5:02 p.m.