API for CancerMutationAnalysis
Cancer mutation analysis
| Global functions | |
|---|---|
| BackRatesBreast | Man page |
| BackRatesColon | Man page |
| BackRatesGBM | Man page |
| BackRatesMB | Man page |
| BackRatesPancreas | Man page |
| EntrezID2Name | Man page |
| GeneAlterBreast | Man page |
| GeneAlterColon | Man page |
| GeneAlterGBM | Man page |
| GeneAlterMB | Man page |
| GeneAlterPancreas | Man page |
| GeneCovBreast | Man page |
| GeneCovColon | Man page |
| GeneCovGBM | Man page |
| GeneCovMB | Man page |
| GeneCovPancreas | Man page |
| GeneID2Name11 | Man page |
| GeneSampBreast | Man page |
| GeneSampColon | Man page |
| GeneSampGBM | Man page |
| GeneSampMB | Man page |
| GeneSampPancreas | Man page |
| SetMethodsSims-class | Man page |
| SetMethodsSims-method | Man page |
| add.zeroes.cma.data | Source code |
| cma.fdr | Man page Source code |
| cma.scores | Man page Source code |
| cma.set.sim | Man page Source code |
| cma.set.stat | Man page Source code |
| cma.simulator | Source code |
| combine.sims | Man page Source code |
| ebfdr | Source code |
| extract.sims.method | Man page Source code |
| get.EventsBySampleBySet.from.EventsBySample | Source code |
| get.cdf.het.berns | Source code |
| get.p.vals.from.q.probs | Source code |
| get.p.vals.from.q.probs.het | Source code |
| get.p.vals.one.set | Source code |
| get.stand.ts | Source code |
| make.cov.obj | Source code |
| make.mut.obj | Source code |
| make.singled.out.samp.mut | Source code |
| p2q | Source code |
| pass.null.het.p.values | Source code |
| pass.null.p.values | Source code |
| perm.null.het.p.values | Source code |
| perm.null.p.values | Source code |
| poisbin | Source code |
| runGSEA | Source code |
| shorten.gene.names | Source code |
| show,SetMethodsSims-method | Man page |
| sim.data | Source code |
| sourceDir | Source code |
