BackRatesPancreas: Data from the Jones et al. 2008 study: Background mutation...

In CancerMutationAnalysis: Cancer mutation analysis

Description

Background rates for somatic mutations used in the Jones et al. 2008 pancreatic cancer study.

Usage

data(JonesPancreas08)

Format

The background rates for somatic mutations used in the Jones et al. pancreatic cancer study, broken down by mutation type. The object is a data frame, with the variables representing the 25 different mutation types, and the rows specifying whether the estimates of the backgrond rates are "Upper," "Median," or "Lower."

References

Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science. DOI: 10.1126/science.1164368

Parmigiani G, Lin J, Boca S, Sjoeblom T, Kinzler KW, Velculescu VE, Vogelstein B. Statistical methods for the analysis of cancer genome sequencing data. http://www.bepress.com/jhubiostat/paper126/

See Also

cma.scores, cma.fdr, cma.set.stat, cma.set.sim, SimMethodsSims-class, GeneCovGBM, GeneSampGBM, GeneAlterGBM

CancerMutationAnalysis documentation built on Nov. 8, 2020, 6:47 p.m.