BackRatesGBM: Data from the Parsons et al. 2008 study: Background mutation...

In CancerMutationAnalysis: Cancer mutation analysis

Description

Background rates for somatic mutations used in the Parsons et al. 2008 glioblastoma multiforme (GBM) study.

Usage

data(ParsonsGBM08)

Format

The background rates for somatic mutations used in the Parsons et al. GBM study, broken down by mutation type. The object is a data frame, with the variables representing the 25 different mutation types, and the rows specifying whether the estimates of the backgrond rates are "Upper," "Median," or "Lower."

References

Parsons DW, Jones S, Zhang X, Lin JCH, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu I, et al. An integrated genomic analysis of human glioblastoma multiforme. Science. DOI: 10.1126/science.1164382

Parmigiani G, Lin J, Boca S, Sjoeblom T, Kinzler KW, Velculescu VE, Vogelstein B. Statistical methods for the analysis of cancer genome sequencing data. http://www.bepress.com/jhubiostat/paper126/

See Also

cma.scores, cma.fdr, cma.set.stat, cma.set.sim, SimMethodsSims-class, GeneCovGBM, GeneSampGBM, GeneAlterGBM

CancerMutationAnalysis documentation built on Nov. 8, 2020, 6:47 p.m.