BackRatesColon: Data from the Wood et al. 2007 study: Background mutation...

In CancerMutationAnalysis: Cancer mutation analysis

Description

Background rates for somatic mutations used in the colon cancer portion of the Wood et al. 2007 study.

Usage

data(WoodColon07)

Format

The background rates for somatic mutations used in the colon cancer portion of the Wood et al. study, broken down by mutation type. The object is a data frame, with the variables representing the 25 different mutation types, and the rows specifying whether the estimates of the backgrond rates are "Lower," "Median," or "Upper," as well as whether or not the rates are separately estimated for the prevalence screen (denoted by "SepPrev").

References

Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, et al. The genomic landscapes of human breast and colorectal cancers. Science. DOI:10.1126/science.1145720

Parmigiani G, Lin J, Boca S, Sjoeblom T, Kinzler KW, Velculescu VE, Vogelstein B. Statistical methods for the analysis of cancer genome sequencing data. http://www.bepress.com/jhubiostat/paper126/

See Also

cma.scores, cma.fdr, cma.set.stat, cma.set.sim, SimMethodsSims-class, GeneCovColon, GeneSampColon, GeneAlterBreast

CancerMutationAnalysis documentation built on Nov. 8, 2020, 6:47 p.m.