GeneSampColon: Data from the Wood et al. 2007 study: Number of samples for...

In CancerMutationAnalysis: Cancer mutation analysis

Description

Number of samples analyzed for each gene and screen type from the colon cancer portion of the Wood et al. 2007 and Sjoeblom et al. 2006 studies.

Usage

data(WoodColon07)

Format

The number of samples in the colon cancer portions of the Wood et al. and Sjoeblom et al. studies, broken down by gene and screen (Discovery and Prevalence). The object is a data frame, with the variables: Gene, Screen, and NrSamp (number of samples). The two possible values for Screen are Disc ("Discovery") and Prev ("Prevalence").

References

Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, et al. The genomic landscapes of human breast and colorectal cancers. Science. DOI:10.1126/science.1145720

Sjoeblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber T, Mandelker D, Leary R, Ptak J, Silliman N, et al. The consensus coding sequences of human breast and colorectal cancers. Science. DOI: 10.1126/science.1133427

Parmigiani G, Lin J, Boca S, Sjoeblom T, Kinzler KW, Velculescu VE, Vogelstein B. Statistical methods for the analysis of cancer genome sequencing data. http://www.bepress.com/jhubiostat/paper126/

See Also

cma.scores, cma.fdr, cma.set.stat, cma.set.sim, SimMethodsSims-class, GeneAlterColon, GeneCovColon

CancerMutationAnalysis documentation built on Nov. 8, 2020, 6:47 p.m.