Files in CancerMutationAnalysis

Cancer mutation analysis

README.md R/make.cov.obj.R R/methods-SetMethodsSims.R R/sim.data.R R/get.stand.ts.R R/perm.null.het.p.values.R R/make.mut.obj.R R/get.p.vals.from.q.probs.R R/pass.null.het.p.values.R R/pass.null.p.values.R R/poisbin.R R/shorten.gene.names.R R/cma.scores.R R/cma.set.sim.R R/perm.null.p.values.R R/p2q.R R/cma.simulator.R R/add.zeroes.cma.data.R R/get.p.vals.from.q.probs.het.R R/functions-for-SetMethods-Sims.R R/get.p.vals.one.set.R R/sourceDir.R R/cma.fdr.R R/AllClasses.R R/runGSEA.R R/ebfdr.R R/make.singled.out.samp.mut.R R/cma.set.stat.R R/get.cdf.het.berns.R R/get.EventsBySampleBySet.from.EventsBySample.R man/cma.set.sim.Rd man/GeneAlterMB.Rd man/GeneSampColon.Rd man/BackRatesMB.Rd man/GeneAlterPancreas.Rd man/GeneCovGBM.Rd man/BackRatesBreast.Rd man/BackRatesGBM.Rd man/BackRatesColon.Rd man/SetMethodsSims-class.Rd man/GeneCovPancreas.Rd man/GeneAlterColon.Rd man/cma.scores.Rd man/extract.sims.method.Rd man/GeneSampBreast.Rd man/GeneAlterGBM.Rd man/BackRatesPancreas.Rd man/GeneSampMB.Rd man/GeneID2Name11.Rd man/GeneSampPancreas.Rd man/EntrezID2Name.Rd man/cma.set.stat.Rd man/combine.sims.Rd man/GeneSampGBM.Rd man/cma.fdr.Rd man/GeneAlterBreast.Rd man/GeneCovBreast.Rd man/GeneCovMB.Rd man/GeneCovColon.Rd inst/doc/CancerMutationAnalysis.R inst/doc/CancerMutationAnalysis.pdf