API for CellaRepertorium
Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)
| Global functions | |
|---|---|
| $,ContigCellDB-method | Man page |
| $<-,ContigCellDB-method | Man page |
| .bind_rows_ccdb | Source code |
| .cluster_permute_test | Man page Source code |
| .execute_filter | Source code |
| .rank_contigs_per_cell | Source code |
| ContigCellDB | Man page Source code |
| ContigCellDB-mutate | Man page |
| ContigCellDB_10XVDJ | Man page Source code |
| [,ContigCellDB,ANY,missing,ANY-method | Man page |
| [,ContigCellDB,ANY,missing-method | Man page |
| [[,ContigCellDB,character,missing-method | Man page |
| access_cdb | Source code |
| as.data.frame.ContigCellDB | Source code |
| canonicalize_cell | Man page Source code |
| canonicalize_cluster | Man page |
| ccdb_ex | Man page |
| ccdb_join | Man page Source code |
| cdhit | Man page Source code |
| cdhitC | Source code |
| cdhit_ccdb | Man page Source code |
| cdhitestC | Source code |
| check_contig_names | Source code |
| check_plot_infra | Source code |
| cleanup_annotations | Source code |
| cluster_filterset | Man page Source code |
| cluster_germline | Man page Source code |
| cluster_logistic_test | Man page Source code |
| cluster_permute_test | Man page Source code |
| cluster_plot | Man page Source code |
| cluster_test_by | Man page Source code |
| contigs_qc | Man page |
| crosstab_by_celltype | Man page Source code |
| dim,ContigCellDB-method | Man page |
| dimnames,ContigCellDB-method | Man page |
| entropy | Man page |
| enumerate_pairing | Man page |
| equalize_ccdb | Man page Source code |
| fancy_name_contigs | Man page Source code |
| filter_cdb | Man page Source code |
| fine_cluster_seqs | Man page |
| fine_clustering | Man page Source code |
| generate_pseudobulk | Man page Source code |
| get_axis_labels | Source code |
| glm_glmer | Source code |
| guess_celltype | Man page Source code |
| hushWarning | Man page Source code |
| ig_chain_recode | Man page |
| left_join_warn | Man page |
| map_axis_labels | Man page Source code |
| modal_category | Man page |
| mutate_cdb | Man page Source code |
| ncol,ContigCellDB-method | Man page |
| np | Man page |
| nrow,ContigCellDB-method | Man page |
| pairing_tables | Man page Source code |
| purity | Man page Source code |
| rank_chain_ccdb | Man page Source code |
| rank_prevalence_ccdb | Man page Source code |
| rbind,ContigCellDB-method | Man page |
| rbind.ContigCellDB | Man page |
| rbind_ContigCellDB | Source code |
| replace_cdb | Source code |
| replace_cluster_tbl | Source code |
| replace_empty | Source code |
| right_join_warn | Man page |
| split_cdb | Man page Source code |
| tcr_chain_recode | Man page |
| valid_ContigCellDB | Source code |
| valid_KeyedTbl | Source code |
