getBigWigFile: Get the path to an endogenous experiment bigwig file

In ChIPSeqSpike: ChIP-Seq data scaling according to spike-in control

Description

Access and returns the path to the endogenous bigwig file of an experiment

Usage

getBigWigFile(theObject)
            
            
## S4 method for signature 'ChIPSeqSpikeDataset'
getBigWigFile(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetList'
getBigWigFile(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
getBigWigFile(theObject)

## S4 method for signature 'Experiment'
getBigWigFile(theObject)

## S4 method for signature 'ExperimentLoaded'
getBigWigFile(theObject)

## S4 method for signature 'ChIPSeqSpikeCore'
getBigWigFile(theObject)

Arguments

theObject

A ChIPSeqSpikeCore, ChIPSeqSpikeDataset, ChIPSeqSpikeDatasetList, ChIPSeqSpikeDatasetBoost, Experiment or ExperimentLoaded object

Details

If the object is ChIPSeqSpikeCore, ChIPSeqSpikeDataset or ChIPSeqSpikeDatasetBoost, getBigWigFile returns the path to the endogenous input DNA experiment bigwig file.

If the object is Experiment or ExperimentLoaded, getBigWigFile returns the path to the endogenous experiment bigwig file.

If the object is ChIPSeqSpikeDatasetList, all bigwig files associated with all dataset are returned at once.

Value

A string of the path to the endogenous bigwig file

Author(s)

Nicolas Descostes

Examples

data(result_extractBinding)
getBigWigFile(csds)

ChIPSeqSpike documentation built on Nov. 8, 2020, 5:29 p.m.