spikeSummary: Output dataset summary information

Description Usage Arguments Details Value Methods (by class) Author(s) See Also Examples

Description

Output a table giving endogenous/exogenous scaling scores and read counts for each experiment contained in a dataset

Usage

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    spikeSummary(theObject)

## S4 method for signature 'Experiment'
spikeSummary(theObject)
## S4 method for signature 'ExperimentLoaded'
spikeSummary(theObject)
## S4 method for signature 'ChIPSeqSpikeDataset'
spikeSummary(theObject)
## S4 method for signature 'ChIPSeqSpikeDatasetList'
spikeSummary(theObject)
## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
spikeSummary(theObject)
## S4 method for signature 'ChIPSeqSpikeDatasetListBoost'
spikeSummary(theObject)

Arguments

theObject

ChIPSeqSpike dataset (see ?spikeDataset)

Details

The rows represent an experiment (with corresponding input below) and the columns represent the endogenous scaling factor (endoScalFact), the exogenous scaling factor (exoScalFact), the number of reads aligned to the reference genome (endoCount) and the number of reads aligned to the exogenous genome (exoCount).

Value

a matrix of information about each experiment

Methods (by class)

Author(s)

Nicolas Descostes

See Also

getRatio

Examples

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data("result_estimateScalingFactors")
spikeSummary(csds)

ChIPSeqSpike documentation built on Nov. 8, 2020, 5:29 p.m.