getScalingFactor: Get the endogenous scaling factor

In ChIPSeqSpike: ChIP-Seq data scaling according to spike-in control

Description

Accesses and returns the experiment or input DNA experiment endogenous scaling factor.

Usage

getScalingFactor(theObject)
            
            
## S4 method for signature 'ChIPSeqSpikeDataset'
getScalingFactor(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
getScalingFactor(theObject)

## S4 method for signature 'Experiment'
getScalingFactor(theObject)

## S4 method for signature 'ExperimentLoaded'
getScalingFactor(theObject)

## S4 method for signature 'ChIPSeqSpikeCore'
getScalingFactor(theObject)

Arguments

theObject

A ChIPSeqSpikeCore, ChIPSeqSpikeDataset, ChIPSeqSpikeDatasetBoost, Experiment or ExperimentLoaded object

Details

If the object is ChIPSeqSpikeCore, ChIPSeqSpikeDataset or ChIPSeqSpikeDatasetBoost, getScalingFactor returns the input DNA experiment endogenous scaling factor.

If the object is Experiment or ExperimentLoaded, getScalingFactor returns the experiment endogenous scaling factor.

Value

A numeric of the endogenous scaling factor

Author(s)

Nicolas Descostes

See Also

getExogenousScalingFactor

Examples

data(result_extractBinding)
getScalingFactor(csds[[1]])

ChIPSeqSpike documentation built on Nov. 8, 2020, 5:29 p.m.