getCount: Get the number of reads aligned to the endogenous reference...

Description Usage Arguments Details Value Author(s) See Also Examples

Description

Access and returns the number of reads of an experiment or input DNA experiment that were aligned to the endogenous reference genome.

Usage

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getCount(theObject)
            
            
## S4 method for signature 'ChIPSeqSpikeDataset'
getCount(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
getCount(theObject)

## S4 method for signature 'Experiment'
getCount(theObject)

## S4 method for signature 'ExperimentLoaded'
getCount(theObject)

## S4 method for signature 'ChIPSeqSpikeCore'
getCount(theObject)

Arguments

theObject

A ChIPSeqSpikeCore, ChIPSeqSpikeDataset, ChIPSeqSpikeDatasetBoost, Experiment or ExperimentLoaded object

Details

If the object is ChIPSeqSpikeCore, ChIPSeqSpikeDataset or ChIPSeqSpikeDatasetBoost, getCount returns the number of reads of the input DNA experiment that were aligned to the endogenous reference genome.

If the object is Experiment or ExperimentLoaded, getCount returns the number of reads of the experiment that were aligned to the endogenous reference genome.

Value

A numeric of the number of reads aligned to the endogenous reference genome

Author(s)

Nicolas Descostes

See Also

getExoCount

Examples

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ChIPSeqSpike documentation built on Nov. 8, 2020, 5:29 p.m.