getMatBindingValues: Get the list of matrices of binding scores

In ChIPSeqSpike: ChIP-Seq data scaling according to spike-in control

Description

Accesses and returns the list of binding scores matrices of all experiments associated with a dataset. These matrices are used to plot boxplots and correlation plots.

Usage

getMatBindingValues(theObject)
            
            
## S4 method for signature 'ChIPSeqSpikeDataset'
getMatBindingValues(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
getMatBindingValues(theObject)

## S4 method for signature 'ChIPSeqSpikeCore'
getMatBindingValues(theObject)

Arguments

theObject

A ChIPSeqSpikeCore, ChIPSeqSpikeDataset or ChIPSeqSpikeDatasetBoost object.

Value

A list of matrices containing binding scores

Author(s)

Nicolas Descostes

See Also

getAverageBindingValues boxplotSpike plotCor

Examples

data(result_extractBinding)
getMatBindingValues(csds[[1]])

ChIPSeqSpike documentation built on Nov. 8, 2020, 5:29 p.m.