Global functions | |
---|---|
. | Man page |
.ChIPseekerEnv | Source code |
.onAttach | Source code |
ChIPseeker | Man page |
ChIPseeker-package | Man page |
GRangesList | Man page |
IDType | Source code |
TXID2EG | Source code |
TXID2EGID | Source code |
TXID2TXEG | Source code |
addGeneAnno | Source code |
annoPie | Source code |
annoPie3D | Source code |
annotatePeak | Man page Source code |
as.GRanges | Man page Source code |
as.data.frame.csAnno | Man page Source code |
batchGetGSMsuppFile | Source code |
covplot | Man page Source code |
csAnno-class | Man page |
downloadGEO.internal | Source code |
downloadGEObedFiles | Man page Source code |
downloadGSMbedFiles | Man page Source code |
dropAnno | Man page Source code |
enrichAnnoOverlap | Man page Source code |
enrichOverlap.peak.internal | Source code |
enrichPeakOverlap | Man page Source code |
getAllFlankingGene | Source code |
getAnnoStat | Source code |
getBioRegion | Man page Source code |
getChrCov | Source code |
getCols | Source code |
getFirstHitIndex | Source code |
getGEOInfo | Man page Source code |
getGEOgenomeVersion | Man page Source code |
getGEOspecies | Man page Source code |
getGSMsuppFile | Source code |
getGene | Source code |
getGeneAnno | Man page Source code |
getGenomicAnnoStat | Source code |
getGenomicAnnotation | Man page Source code |
getGenomicAnnotation.internal | Source code |
getGenomicVersion | Source code |
getIntersectLength | Source code |
getNearestFeatureIndicesAndDistances | Man page Source code |
getPromoters | Man page Source code |
getSampleFiles | Man page Source code |
getSgn | Source code |
getTagCiMatrix | Source code |
getTagCount | Source code |
getTagMatrix | Man page Source code |
get_exonList | Source code |
get_gsminfo | Source code |
get_intronList | Source code |
gsminfo | Man page |
info | Man page |
is.dir | Source code |
isBedFile | Source code |
isPeakFeatureOverlap | Source code |
list_to_dataframe | Source code |
loadPeak | Source code |
loadTxDb | Source code |
overlap | Man page Source code |
parseBootCiPerc | Source code |
parse_targetPeak_Param | Source code |
peak2DF | Source code |
peakDF2GRanges | Source code |
peakHeatmap | Man page Source code |
peakHeatmap.internal | Source code |
peakHeatmap.internal2 | Source code |
plotAnnoBar | Man page |
plotAnnoBar,csAnno,ANY-method | Man page |
plotAnnoBar,csAnno-method | Man page |
plotAnnoBar,list-method | Man page |
plotAnnoBar.data.frame | Man page Source code |
plotAnnoPie | Man page |
plotAnnoPie,csAnno,ANY-method | Man page |
plotAnnoPie,csAnno-method | Man page |
plotAnnoPie.csAnno | Man page Source code |
plotAvgProf | Man page Source code |
plotAvgProf.internal | Source code |
plotAvgProf2 | Man page Source code |
plotDistToTSS | Man page |
plotDistToTSS,csAnno,ANY-method | Man page |
plotDistToTSS,csAnno-method | Man page |
plotDistToTSS,list-method | Man page |
plotDistToTSS.data.frame | Man page Source code |
prepareGSMInfo | Source code |
readPeakFile | Man page Source code |
reexports | Man page |
seq2gene | Man page Source code |
show | Man page |
show,csAnno,ANY-method | Man page |
show,csAnno-method | Man page |
shuffle | Man page Source code |
sortChrName | Source code |
subset,csAnno-method | Man page |
subset.csAnno | Source code |
tagHeatmap | Man page Source code |
tagMatrixList | Man page |
ucsc_release | Man page |
updateGenomicAnnotation | Source code |
upsetplot | Man page |
upsetplot,csAnno-method | Man page |
upsetplot.csAnno | Source code |
vennpie | Man page |
vennpie,csAnno-method | Man page |
vennpie.csAnno | Source code |
vennplot | Man page Source code |
vennplot.peakfile | Man page Source code |
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