plotAvgProf2: plotAvgProf

Description Usage Arguments Value Author(s)

View source: R/plotTagMatrix.R

Description

plot the profile of peaks that align to flank sequences of TSS

Usage

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plotAvgProf2(peak, weightCol = NULL, TxDb = NULL, upstream = 1000,
  downstream = 1000, xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency", conf, facet = "none", free_y = TRUE,
  verbose = TRUE, ...)

Arguments

peak

peak file or GRanges object

weightCol

column name of weight

TxDb

TxDb object

upstream

upstream position

downstream

downstream position

xlab

xlab

ylab

ylab

conf

confidence interval

facet

one of 'none', 'row' and 'column'

free_y

if TRUE, y will be scaled by AvgProf

verbose

print message or not

...

additional parameter

Value

ggplot object

Author(s)

G Yu


ChIPseeker documentation built on May 2, 2018, 2:36 a.m.