vennplot: vennplot

In ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

Description

plot the overlap of a list of object

Usage

vennplot(Sets, by = "gplots")

Arguments

Sets	a list of object, can be vector or GRanges object
by	one of gplots or Vennerable

Value

venn plot that summarize the overlap of peaks from different experiments or gene annotation from different peak files.

Author(s)

G Yu

Examples

## example not run
## require(TxDb.Hsapiens.UCSC.hg19.knownGene)
## txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
## peakfiles <- getSampleFiles()
## peakAnnoList <- lapply(peakfiles, annotatePeak)
## names(peakAnnoList) <- names(peakfiles)
## genes= lapply(peakAnnoList, function(i) as.data.frame(i)$geneId)
## vennplot(genes)

ChIPseeker documentation built on March 6, 2021, 2 a.m.