peakHeatmap: peakHeatmap

In ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

Description

plot the heatmap of peaks align to flank sequences of TSS

Usage

peakHeatmap(
  peak,
  weightCol = NULL,
  TxDb = NULL,
  upstream = 1000,
  downstream = 1000,
  xlab = "",
  ylab = "",
  title = NULL,
  color = NULL,
  verbose = TRUE
)

Arguments

peak	peak file or GRanges object
weightCol	column name of weight
TxDb	TxDb object
upstream	upstream position
downstream	downstream position
xlab	xlab
ylab	ylab
title	title
color	color
verbose	print message or not

Value

figure

Author(s)

G Yu

ChIPseeker documentation built on March 6, 2021, 2 a.m.