getGenomicAnnotation: getGenomicAnnotation

Description Usage Arguments Value Author(s)

View source: R/getGenomicAnnotation.R

Description

get Genomic Annotation of peaks

Usage

1
2
getGenomicAnnotation(peaks, distance, tssRegion = c(-3000, 3000), TxDb, level,
  genomicAnnotationPriority, sameStrand = FALSE)

Arguments

peaks

peaks in GRanges object

distance

distance of peak to TSS

tssRegion

tssRegion, default is -3kb to +3kb

TxDb

TxDb object

level

one of gene or transcript

genomicAnnotationPriority

genomic Annotation Priority

sameStrand

whether annotate gene in same strand

Value

character vector

Author(s)

G Yu


ChIPseeker documentation built on July 26, 2018, 2 a.m.