API for Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Global functions
Chicago Man page
Chicago-package Man page
addTLB Source code
as.dataTableList Source code
binning Source code
cdUnitTest Man page
checkForIncompatibilities Source code
chicagoData Man page
chicagoPipeline Man page Source code
copyCD Man page Source code
defaultSettings Man page Source code
describeMx Source code
describeNonDefaultSettings Source code
describeVec Source code
describeVecNames Source code
distFun Source code
drawSamples Source code
estimateBMean Source code
estimateBrownianComponent Man page Source code
estimateBrownianNoise Man page
estimateDispersion Source code
estimateDistFun Man page Source code
estimateTechnicalNoise Man page Source code
expit Source code
exportResults Man page Source code
exportToGI Man page Source code
geo_mean Source code
getAvgFragLength Source code
getEtaBar Source code
getNoOfHypotheses Source code
getPvals Man page Source code
getSampleScalingFactors Source code
getScores Man page Source code
getSkOnly Man page Source code
getWeights Source code
ifnotnull Source code
intData Man page
intData,chicagoData-method Man page
intData<- Man page
intData<-,chicagoData-method Man page
locateFile Source code
logit Source code
mergeSamples Man page Source code
modifySettings Man page Source code
naToInf Source code
normaliseBaits Man page Source code
normaliseFragmentSets Source code
normaliseOtherEnds Man page Source code
onAttach Source code
overlapFragWithFeatures Man page Source code
params Man page
params,chicagoData-method Man page
params<- Man page
params<-,chicagoData-method Man page
peakEnrichment4Features Man page Source code
plotBaits Man page Source code
plotDistFun Man page Source code
plotNumberOL Source code
readAndMerge Man page Source code
readBaitmap Source code
readBedList Source code
readNPBfile Source code
readNbaitsPBfile Source code
readProxOEfile Source code
readRmap Source code
readSample Man page Source code
removeNAs Source code
setExperiment Man page Source code
settings Man page
settings,chicagoData-method Man page
splitCHiC Source code
updateSettings Source code
wb2b Source code
whichbait2bait Source code
Chicago documentation built on Nov. 17, 2017, 1:36 p.m.