Constructor for the
Arguments passed to
While this function can be used to create a
chicagoData object, most users will use the
setExperiment function instead.
chicagoData object has three slots, accessed as follows:
intData(cd) is a data.table (note: not a data.frame) that contains information about fragment pairs.
settings(cd) is a list of settings, usually set with the setExperiment() function. For more information about valid settings, please see
defaultSettings. To modify the settings, use
params(cd) is a list of parameters. CHiCAGO estimates these automatically, as part of the pipeline.
Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett
cd <- chicagoData()