cdUnitTest: ChicagoData object for unit testing
In Chicago: CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Description Usage Details Value Source See Also Examples

This data set is used for unit testing - it is too small to run all of the steps of CHiCAGO. For a toy data set that is large enough, please see the data package. (Note that cdUnitTest is a subset of those data.)

1	data("cdUnitTest")

The data are derived from mouse ESCs. They are a subset of the object smESC (from the PCHiCdata package)

A chicagoData object.

Schoenfelder, S. et al. "The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements." Genome research 25.4 (2015): 582-597.

smESC, chicagoData

data(cdUnitTest)

##modifications to cdUnitTest, ensuring it uses correct design directory
designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign")
cdUnitTest <- modifySettings(cd=cdUnitTest, designDir=designDir)

print(cdUnitTest)