getPvals: Get P-values
In Chicago: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Description
Usage
Arguments
Details
Value
Warning
Author(s)
See Also
Examples
Description
Based on a Delaporte model, calculate the P-value associated with each observation.
Usage
1
getPvals(cd)
Arguments
cd
A chicagoData object.
Details
The parameters for the Delaporte distribution are obtained as follows: the NB mean from the column intData(cd)$Bmean, the Poisson mean from the column intData(cd)$Tmean, and the dispersion from params(cd)$dispersion.
Value
An object of class chicagoData, with new column log.p.
Warning
The object intData(cd) is updated by reference. Thus, intData(cd) will be altered. See vignette for further information.
Author(s)
Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett
See Also
Examples
1
2
Chicago documentation built on Nov. 8, 2020, 8:15 p.m.
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Description Usage Arguments Details Value Warning Author(s) See Also Examples
Description
Based on a Delaporte model, calculate the P-value associated with each observation.
Usage
1 | getPvals(cd)
|
Arguments
cd |
A |
Details
The parameters for the Delaporte distribution are obtained as follows: the NB mean from the column intData(cd)$Bmean, the Poisson mean from the column intData(cd)$Tmean, and the dispersion from params(cd)$dispersion.
Value
An object of class chicagoData, with new column log.p.
Warning
The object intData(cd) is updated by reference. Thus, intData(cd) will be altered. See vignette for further information.
Author(s)
Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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