readAndMerge: Read And Merge

In Chicago: CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Description

A wrapper that calls readSample() on a number of files, then mergeSamples().

Usage

readAndMerge(files, cd, ...)

Arguments

files	Character vector containing the locations of the files to read in.
cd	A chicagoData object, usually created with setExperiment.
...	Further arguments passed to mergeSamples.

Value

An object of class chicagoData.

Author(s)

Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett

See Also

readSample, mergeSamples

Examples

filesDir <- file.path(system.file("extdata", package="Chicago"), "unitTestData")
files <- file.path(filesDir, dir(filesDir))
print(files) ##we will read in and merge these files

designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign")

cd <- setExperiment(designDir=designDir)
cd <- readAndMerge(files, cd)

Chicago documentation built on Nov. 8, 2020, 8:15 p.m.