Files in Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization

NAMESPACE
NEWS
.BBSoptions
DESCRIPTION
session.txt
tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/testRunFunctionsTwice.R tests/testthat/testWeights.R tests/testthat/testRecalculateColumns.R
build/vignette.rds
data/cdUnitTest.rda
R/allGenerics.R R/chicago.R R/allClasses.R R/chicagoData-methods.R R/zzz.R R/peakEnrichment4Features.R man/defaultSettings.Rd man/overlapFragWithFeatures.Rd man/readAndMerge.Rd man/getScores.Rd man/Chicago-package.Rd man/plotDistFun.Rd man/cdUnitTest.Rd man/normaliseBaits.Rd man/modifySettings.Rd man/setExperiment.Rd man/peakEnrichment4Features.Rd man/estimateBrownianComponent.Rd man/mergeSamples.Rd man/copyCD.Rd man/exportResults.Rd man/chicagoPipeline.Rd man/chicagoData.Rd man/getSkOnly.Rd man/readSample.Rd man/plotBaits.Rd man/estimateTechnicalNoise.Rd man/estimateDistFun.Rd man/getPvals.Rd man/normaliseOtherEnds.Rd vignettes/Chicago.Rmd
vignettes/Chicago.bib
inst/CITATION
inst/doc/Chicago.Rmd
inst/doc/Chicago.html
inst/doc/Chicago.R
inst/extdata/weights/mESC-2reps.settings
inst/extdata/weights/GM12878-2reps.settings
inst/extdata/weights/humanMacrophage-7reps.settings
inst/extdata/unitTestData/unitTest_mESC_rep1.chinput
inst/extdata/unitTestData/unitTest_mESC_rep2.chinput
inst/extdata/unitTestDesign/unitTest.baitmap
inst/extdata/unitTestDesign/unitTest.nbpb
inst/extdata/unitTestDesign/unitTest.rmap
inst/extdata/unitTestDesign/unitTest.poe
inst/extdata/unitTestDesign/unitTest.npb
inst/extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
inst/extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
inst/extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
inst/extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
inst/extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
inst/extdata/unitTestChIP/featuresmESC.txt
Chicago documentation built on Nov. 17, 2017, 1:36 p.m.