plotDistFun: Plot the Distance Function
In Chicago: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Estimates the function that models how the expected number of counts decreases with increasing distance.
Usage
1
plotDistFun(cd, ...)
Arguments
cd
A chicagoData object.
...
Further arguments passed to plot.
Value
A plot.
Author(s)
Jonathan Cairns
See Also
Examples
1
2
Example output
Loading required package: data.table
Welcome to CHiCAGO - version 1.4.0
If you are new to CHiCAGO, please consider reading the vignette through the command: vignette("Chicago").
NOTE: Default values of tlb.minProxOEPerBin and tlb.minProxB2BPerBin changed as of Version 1.1.5. No action is required unless you specified non-default values, or wish to re-run the pipeline on old chicagoData objects. See news(package="Chicago")
Chicago documentation built on Nov. 8, 2020, 8:15 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Estimates the function that models how the expected number of counts decreases with increasing distance.
Usage
1 | plotDistFun(cd, ...)
|
Arguments
cd |
A |
... |
Further arguments passed to |
Value
A plot.
Author(s)
Jonathan Cairns
See Also
Examples
1 2 |
Example output
Loading required package: data.table
Welcome to CHiCAGO - version 1.4.0
If you are new to CHiCAGO, please consider reading the vignette through the command: vignette("Chicago").
NOTE: Default values of tlb.minProxOEPerBin and tlb.minProxB2BPerBin changed as of Version 1.1.5. No action is required unless you specified non-default values, or wish to re-run the pipeline on old chicagoData objects. See news(package="Chicago")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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