AA_REDUCED list contains reductions of the standard amino acid alphabet (
Reduced amino alphabets can sometimes improve sensitivity and specificity of finding homologous matches between amino acid sequences. The first twelve
AA_REDUCED alphabets were optimized for finding synteny between genomic sequences. The remaining alphabets are from a review of published amino acid alphabets (Solis, 2015).
Solis, A. (2015). Amino acid alphabet reduction preserves fold information contained in contact interactions in proteins. Proteins: Structure, Function, and Genetics, 83(12), 2198-2216.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.