Expand Ambiguities into All Permutations of a DNAStringSet
Performs the inverse function of
ConsensusSequence by expanding any ambiguities present in sequences.
Ambiguity codes in the
IUPAC_CODE_MAP can be used to represent multiple nucleotides at a single position. Using these letters, multiple oligonucleotide permutations can be represented with a single ambiguous sequence. This function expands each sequence in the
DNAStringSet input into all of its permutations. Note that sequences with many ambiguities can result in a very large number of potential permutations.
RNAStringSetList with one element for each sequence in
Erik Wright DECIPHER@cae.wisc.edu
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