AlvMac_allGO: Example of custom gene ontology annotations.

Description Usage Details Value Source Examples

Description

An example data.frame providing the identifier, name and namespace corresponding to gene ontology identifiers, compatible with the AlvMac example ExpressionSet.

Usage

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data("AlvMac_allGO")

Details

This data-frame includes all gene ontologies present in the btaurus_gene_ensembl dataset of the Ensembl BioMart server, including those associated with no gene identifier in the AlvMac example ExpressionSet.

See the help page of the GO_analyse function for an example usage.

Value

A data frame detailing information about 13,302 gene ontologies:

Source

These annotations were obtained from the Ensembl BioMart server using the biomaRt package to access the Ensembl release 75 http://feb2014.archive.ensembl.org.

Examples

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# Load the data
data(AlvMac_allGO)

# Structure of the data
str(AlvMac_allGO)

# First few rows
head(AlvMac_allGO)

GOexpress documentation built on Nov. 8, 2020, 7:45 p.m.