AlvMac_allgenes: Example of custom gene feature annotations.

In GOexpress: Visualise microarray and RNAseq data using gene ontology annotations

Description

An example data.frame providing the identifier, name and description corresponding to Ensembl gene identifiers present in the AlvMac example ExpressionSet.

Usage

data("AlvMac_allgenes")

Details

This data-frame includes only Ensembl gene identifiers present in the AlvMac example ExpressionSet.

See the help page of the GO_analyse function for an example usage.

Value

A data frame detailing information about the 100 gene features present in the AlvMac example ExpressionSet:

• gene_id are Ensembl gene identifiers.

• external_gene_name contains the corresponding gene name.

• description contains the corresponding description.

Source

These annotations were obtained from the Ensembl BioMart server using the biomaRt package to access the Ensembl release 75 http://feb2014.archive.ensembl.org.

Examples

# Load the data
data(AlvMac_allgenes)

# Structure of the data
str(AlvMac_allgenes)

# First few rows
head(AlvMac_allgenes)

GOexpress documentation built on Nov. 8, 2020, 7:45 p.m.