AlvMac_results.pVal: Sample output from the 'pValue_GO()' function on an RNAseq...

Description Usage Value Warning Source Examples

Description

This variable may be used to test the filtering and visualisation methods implemented in the package. It contains the output of successively applying the commands AlvMac_results = GO_analyse(eSet=AlvMac, f="Treatment") and AlvMac_results.pVal = pValue_GO(AlvMac_results, N=100, ranked.by=result$rank.by, rank.by='P') to the toy input data AlvMac.

Usage

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data("AlvMac_results.pVal")

Value

A list of 9 slots summarising the input and results of the analysis:

Warning

Running the above command again, you might obtain slightly different scores and ranks due to the stochastic process of sampling used by the random forest algorithm. However, the ranking metric was found to be robust and stable across run, given adequate number of trees and predictor variables sampled.

To produce reproducible results, use the set.seed() function prior to running any randomising or sampling function.

Source

Source data are part of a publication in review.

Examples

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GOexpress documentation built on May 6, 2019, 3:41 a.m.